ReMoDy: job.cc Source File

00001 
00006 #include <string.h>
00007 #include <cstdlib>
00008 #include <iostream>
00009 using namespace std;
00010 #include <libxml/xmlmemory.h>
00011 #include <libxml/parser.h>
00012 #include <math.h>
00013 #include "def.h"
00014 #include "io.h"
00015 #include "run.h"
00016 #include "list.h"
00017 #include "collection.h"
00018 #include "model.h"
00019 #include "species.h"
00020 using namespace Species;
00021 #include "domain.h"
00022 
00023 void usage() {
00024         cout <<"Usage:\n\tFirst run:\n"<<Run::programname<<"\nSubsequent runs:\n"<<Run::programname<<" restart_file\n";
00025 }
00030 void parsename(char *name, char *filename) {
00031         char *period=strchr(filename, '.');
00032         int len=period==NULL?strlen(filename):period-filename;
00033         strncpy(name, filename, len);
00034         name[len]='\0';
00035 }
00041 int     main(int argc, char *argv[]) {
00042 
00043         Run::init(argc,argv);
00044         Domain domain(Run::inputfile);
00045         if(Run::option.xterm)printf("%c[2J",ESC);
00046         int niter=IO::getIter(Run::configfile);
00047         if(niter<=0) { 
00048                 cout<<"Number of iterations "<<niter<<" should be > 0\nAborting\n";
00049                 exit(0);
00050         }
00051         domain.run(IO::getIter(Run::configfile));
00052         char taskname[WORDLENGTH];
00053         if(Run::option.restart) parsename(taskname, Run::inputfile);
00054         else parsename(taskname, Run::programname);
00055         domain.save(taskname);
00056         cout<<"RUN FINISHED\n";cout.flush();
00057         return 0;
00058 }